Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs805535 chr20:37116564 T/C 0.000243 119 22.9 33.78 46.43 KM Plot
THYM rs805545 chr20:37109527 T/C 0.000141 118 22.9 34.93 45.87 KM Plot
THYM rs805554 chr20:37107041 A/T 0.000161 119 46.27 32.7 22.9 KM Plot
THYM rs8057962 chr16:77757853 C/G 2.0E-8 119 23.8 33.85 42.82 KM Plot
THYM rs8059004 chr16:24837905 G/A 3.77E-6 118 49.73 29.23 31.37 KM Plot
THYM rs8070781 chr17:71172983 T/C 1.28E-8 116 41.7 41.77 12.63 KM Plot
THYM rs8101818 chr19:43332984 A/T 0.000134 118 44.38 26 28.43 KM Plot
THYM rs817153 chr9:98510231 G/A 7.2E-7 116 34.87 51.23 38.58 KM Plot
THYM rs829562 chr2:30695756 T/C 3.24E-7 119 38.58 46.23 13.23 KM Plot
THYM rs829570 chr2:30684289 G/C 1.93E-8 118 38.58 46.6 13.23 KM Plot
THYM rs829571 chr2:30683730 A/G 3.24E-7 119 38.58 46.23 13.23 KM Plot
THYM rs829573 chr2:30682630 A/T 3.24E-7 119 38.58 46.23 13.23 KM Plot
THYM rs829576 chr2:30680616 C/T 3.24E-7 119 38.58 46.23 13.23 KM Plot
THYM rs829579 chr2:30678838 G/C 3.24E-7 119 38.58 46.23 13.23 KM Plot
THYM rs829584 chr2:30677275 C/T 3.24E-7 119 13.23 46.23 38.58 KM Plot